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Species belonging to selected taxon:
Saccharum officinarum
ABOUT THIS RECORD
ID:
MNEST045328
species:
Saccharum officinarum
source:
microPC, original name:
miR827
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGATGACCATCAGCAAAC
miRNA*
TTGTTGGTGGTCATTTAACC
mismatches:
1
bulges:
0
View larger
pre-miRNA
GTT
TTGTTGGTGGTCATTTAACC
ATGCTTCCATCGATGGGTGCATGGTTTATGGCAGAGTGTGATGCCATGAACTCATCATGGTCATGCATGTGTGCATG
G
TTAGATGACCATCAGCAAAC
dot-bracket secondary structure
..(
((((((((((((((((((((
((((..((((.(((((((.((((((..((.((.....)).)))))))).))))))))))).(((....))).)))))
)
))))))))))))))))))).
SIMILARITIES
miRBase
ssp-MIR827
:
2e-64
PMRD
osa-miR827b
:
0.000006
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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